Genes to Monitor Ecophysiological Parameters for Plants Under Abiotic Stress Conditions
Keywords:
Particle films, gene expression, gene of interest, interaction networksAbstract
In plants, different mechanisms are activated by gene expression in response to abiotic stresses. The great challenge is to study the physiological patterns and the genes involved in each pathway to evaluate the mechanisms used by plant the overcame de stressfully conditions. To mitigate the negative impact of adverse environmental conditions, the particle films technique has become a potential crop management tool for plants to overcome the adverse environmental conditions. The mean goal of this work is to identify genes expressed and involved in different ecophysiological pathways responding to abiotic stresses. GeneMANIA and Cytoscape software were fundamental in the establishment of gene networks. In addition, a graphical representation encompassed other closely linked genes with similar functions. From the perspective of particle film technology, the genes involved in each ecophysiological parameter may, in the future, elucidate new plant response mechanisms, and therefore, a more adaptive molecular response to adverse environmental conditions.
References
E. Llorens., A. González-Hernández., L. Scalschi., E. Fernández-Crespo., G. Camañes., B. Vicedo., et al. Priming mediated stress and cross-stress tolerance in plants: concepts and opportunities, Elsevier: Amsterdam, The Netherlands, 2020.
A.R.M.A. Merwad., E.S.M. Desoky., M.M. Rady. “Response of water deficit-stressed Vigna unguiculata performances to silicon, proline or methionine foliar application.” Scientia Horticulturae, vol. 228, pp. 132–144, 2018.
Z. Tátrai., R. Sanoubar., Z. Pluhár., S. Mancarella., F. Orsini., G. Gianquinto. “Morphological and Physiological Plant Responses to Drought Stress in Thymus citriodorus.” International Journal of Agronomy, vol. 2016, pp. 1-8, 2016.
M. Matsunami., H. Hayashi., Y. Tominaga., Y. Nagamura., M. Murai-Hatano., J. Ishikawa-Sakurai., et al. “Effective methods for practical application of gene expression analysis in field-grown rice roots.” Plant Soil, vol. 433, pp. 173–187, 2018.
P.S.O. Da Silva., L.F.G. Oliveira Junior., M.I.S. Gonzaga., L.B. dos S. Maciel., M.P. Fiaes., E.C. de Mattos., et al. “Effects of calcium particle films and natural shading on ecophysiological parameters of conilon coffee.” Scientia Horticulturae, vol. 245, pp. 171–177, 2016.
L.T. Dinis., S. Bernardo., A. Luzio., G. Pinto., M. Meijón., M. Pintó-Marijuan., et al. “Kaolin modulates ABA and IAA dynamic sand physiology of grapevine under Mediterranean summer stress.” Journal of Plant Physiology, vol. 220, pp. 181–192, 2018.
H.H. Zhou., Y.N. Chen., W.H. Li., Y.P. Chen. “Photosynthesis of Populus euphratica in relation to groundwater depths and high temperature in arid environment, northwest China.” Photosynthetica, vol. 48, pp. 257–268, 2010.
J. Speirs., A. Binney., M. Collins., E. Edwards., B. Loveys. “Expression of ABA synthesis and metabolism genes under different irrigation strategies and atmospheric VPDs is associated with stomatal conductance in grapevine (Vitis vinifera L.).” Journal of Experimental Botany, vol. 64, pp. 1907–1916, 2013.
G. Xuanyuan., C. Lu., R. Zhang., J. Jiang. “Overexpression of StNF-YB3.1 reduces photosynthetic capacity and tuber production, and promotes ABA-mediated stomatal closure in potato (Solanum tuberosum L.).” Plant Science, vol. 261, pp. 50–59, 2017.
C. Engineer., M. Hashimoto-Sugimoto., J. Negi., M. Israelsson-Nordstrom., T. Azoulay-Shemer., W.J. Rappel, et al. “CO₂ sensing and CO₂ regulation of stomatal conductance: advances and open questions.” Trends in Plant Science, vol. 21, pp. 16–30, 2016.
K.H. Lau., M. del Rosario Herrera., E. Crisovan., S. Wu., Z. Fei., M.A. Khan., et al. “Transcriptomic analysis of sweet potato under dehydration stress identifies candidate genes for drought tolerance.” Plant Direct, vol. 2, pp. e00092, 2018.
S. Wei., W. Hu., X. Deng., Y. Zhang., X. Liu., X. Zhao., et al. “A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.” BMC Plant Biology, vol. 14, 2014.
T. Gao., Y. Wu., Y. Zhang., L. Liu., Y. Ning., D. Wang., et al. “OsSDIR1 overexpression greatly improves drought tolerance in transgenic rice.” Plant Molecular Biology, vol. 76, pp. 145–156, 2011.
J. Li., Y. Li., Z. Yin., J. Jiang., M. Zhang., X. Guo., et al. “OsASR5 enhances drought tolerance through a stomatal closure pathway associated with ABA and H₂O₂ signalling in rice”, Plant Biotechnology Journal, vol. 2, pp. 183-196, 2017.
N.S. Elhaddad., L. Hunt., J. Sloan., J.E. Gray. “Light-induced stomatal opening is affected by the guard cell protein kinase APK1b.” PLoS One, vol. 9, pp. 1–7, 2014.
P.J. Franks., T.W. Doheny-Adams., Z.J. Britton-Harper., J.E. Gray. “Increasing water-use efficiency directly through genetic manipulation of stomatal density.” New Phytologist Foundation, vol. 207, pp. 188–195, 2015.
W.-H. Wang., J. Chen., T.-W. Liu., J. Chen., A.-D. Han., M. Simon., et al. “Regulation of the calcium-sensing receptor in both stomatal movement and photosynthetic electron transport is crucial for water use efficiency and drought tolerance in Arabidopsis.” Journal of Experimental Botany, vol. 65, pp. 223–234, 2013.
K.B. Mishraa., R. Iannaconeb., A. Petrozzab., A. Mishraa., N. Armentano., G.La. Vecchia., et al. “Engineered drought tolerance in tomato plants is reflected in chlorophyll fluorescence emission.” Plant Science, vol. 182, pp. 79–86, 2012.
Y. Fan., Q. Wang., L. Kang., W. Liu., Q. Xu., S. Xing., et al. “Transcriptome-wide characterization of candidate genes for improving the water use effciency of energy crops grown on semiarid land.” Journal of Experimental Botany, vol. 66, pp. 6415–6429, 2015.
J. Pan., S. Lin., N. Woodbury. “Bacteriochlorophyll excitedstate quenching pathways in bacterial reaction centers with the primary donor oxidized.” The Journal of Physical Chemistry B, vol. 116, pp. 2014–2022, 2012.
Y. Song., Q. Chen., X. Shao., D. Zhang. “Effects of high temperature on photosynthesis and related gene expression in poplar.” BMC Plant Biology, vol. 14, 2014.
V. Nardone., A. Chaves-Sanjuan., M. Nardini. “Structural determinants for NF-Y/DNA interaction at the CCAAT box.” Biochimica et Biophysica Acta, vol. 5, pp. 571-580, 2017.
T.J. Stephenson., C.L. McIntyre., C. Collet., G.P. Xue. “TaNF-YB3 is involved in the regulation of photosynthesis genes in Triticum aestivum.” Functional & Integrative Genomics, vol. 11, pp. 327–340, 2011.
T. Wang., D. Huang., B. Chen., N. Mao., Y. Qiao., et al. “Differential expression of photosynthesis-related genes in pentaploid interspecific hybrid and its decaploid of Fragaria spp.” Genes and Genomics, vol. 40, pp. 321–331, 2018.
S. Wang and E. Blumwald. “Stress-induced chloroplast degradation in arabidopsis is regulated via a process independent of autophagy and senescence-associated vacuoles.” Plant Cell, vol. 26, pp. 4875–4888, 2014.
M. Patel., S. Milla-Lewis., W. Zhang., K. Templeton., W.C. Reynolds., K. Richardson., et al. “Overexpression of ubiquitin-like LpHUB1 gene confers drought tolerance in perennial ryegrass.” Plant Biotechnology Journal, vol.13, pp. 689–699, 2015.
C. Vásquez-Robinet., J.I. Watkinson., A.A. Sioson., N. Ramakrishnan., L.S. Heath., R. Grene. “Differential expression of heat shock protein genes in preconditioning for photosynthetic acclimation in water-stressed loblolly pine.” Plant Physiology and Biochemistry, vol. 48, pp. 256–264, 2010.
E. Georgii., M. Jin., J. Zhao., B. Kanawati., P. Schmitt-kopplin., A. Albert., et al. “Relationships between drought, heat and air humidity responses revealed by transcriptome-metabolome co-analysis.” BMC Plant Biology, vol. 17, pp. 1–23, 2017.
M. Sharma and G.K. Pandey. “Expansion and function of repeat domain proteins during stress and development in plants.” Frontiers in Plant Science, vol. 6, pp. 1–15, 2016.
H. Wada., C. Masumoto-kubo., Y. Gholipour., H. Nonami., F. Tanaka. “Rice chalky ring formation caused by temporal reduction in starch biosynthesis during osmotic adjustment under foehn-induced dry wind.” PLoS One, vol. 9, pp. 1–12, 2014.
B. In and J.H. Lim. “Potential vase life of cut roses: Seasonal variation and relationships with growth conditions, phenotypes, and gene expressions.” Postharvest Biology and Technology, vol. 135, pp. 93–103, 2018.
P. Sudhakar., M. Tharanya., K. Sivasakthi., M. Srikanth., C.T. Hash., J. Kholova., et al. “Molecular cloning and expression analysis of Aquaporin genes in pearl millet [Pennisetum glaucum (L) R . Br .] genotypes contrasting in their transpiration response to high vapour pressure deficits.” Plant Science, vol. 265, pp. 167–176, 2017.
H. Tian., X.Wang., H. Guo., Y. Cheng., C. Hou., J. Chen. “NTL8 Regulates Trichome formation in Arabidopsis by directly activating R3 MYB Genes TRY and TCL1.” Journal of Plant Physiology, vol. 174, pp. 2363–2375, 2017.
V. Kumar., D. Saha., D.R. Thakare., J. Anjana., P.K. Jain., S.R. Bhaa., R. Srinivasan. “Plant science a part of the upstream promoter region of SHN2 gene directs trichome specific expression in Arabidopsis thaliana and heterologous plants.” Plant Science, vol. 264, pp. 138–148, 2017.
P.J. Tricker., C.M.R. López., P. Hadley., C. Wagstaff., J. Mike., P.J. Tricker., et al. “Pre-conditioning the epigenetic response to high vapor pressure deficit increases the drought tolerance of Arabidopsis thaliana.” Plant Signaling & Behavior, vol. 8, pp. 1–3, 2013.
T. Chamchaiyaporn., K. Jutamanee., P. Kasemsap., P. Vaithanomsat., C. Henpitak. “Effects of kaolin clay coating on mango leaf gas exchange, fruit yield and quality.” Kasetsart Journal - Natural Science, vol. 47, pp. 479–491, 2013.
F. Tardieu., T. Simonneau., B. Muller. “The physiological basis of drought 436 tolerance in crops plants: A scenario-dependent probabilistic approach.” Annual Review of Plant Biology, vol. 69, 2018.
P.J. Franks., I.J. Leitch., E.M. Ruszala., E.M. Hetherington., D.J. Beerling. “Physiological framework for adaptation of stomata to CO₂ from glacial to future concentrations.” Philosophical Transactions of the Royal Society B, vol. 367, pp. 537–546, 2012.
A. Fracasso., E. Magnanini., A. Marocco., S. Amaducci.“Real-time determination of photosynthesis, transpiration, water-use efficiency and gene expression of two Sorghum bicolor (Moench) genotypes subjected to dry-down.” Frontiers in Plant Science, vol. 8, pp. 1–12, 2017.
J.L. Romero-Romero., C. Inostroza-Blancheteau., D. Orellana., F. Aquea. “Stomata regulation by tissue-specific expression of the Citrus sinensis MYB61 transcription factor improves water-use efficiency in Arabidopsis.” Plant Physiology and Biochemistry, vol. 130, 2018.
T. Kuromori., M. Fujita., K. Urano., T. Tanabata., E. Sugimoto., K. Shinozaki. “Overexpression of AtABCG25 enhances the abscisic acid signal in guard cells and improves plant water use efficiency.” Plant Science, vol. 251, pp. 75–81, 2016.
M. Amara., M. Capellades., M.D. Ludevid., M. Pagès. “Enhanced water stress tolerance of transgenic maize plants over-expressing LEA Rab28 gene.” Journal of Plant Physiology, vol. 170, 2013.
B. Mao., Z. Cheng., C. Lei., F. Xu., S. Gao., Y. Ren., et al. “Wax crystal-sparse leaf, a rice homologue of WAX2/GL1, is involved in synthesis of leaf cuticular wax.” Planta, vol. 235, pp. 39–52, 2012.
J. Flexas., M.M. Barbour., O. Brendel., H.M. Cabrera., M. Carriquí., A. Díaz-espejo., et al. “Mesophyll diffusion conductance to CO2: An unappreciated central player in photosynthesis.” Plant Science, vol. 193–194, pp. 70–84, 2012.
M. Miniussi., L. Del Terra., T. Savi., A. Pallavicini., A. Nardini. “Aquaporins in Coffea arabica L.: Identification, expression, and impacts on plant water relations and hydraulics.” Plant Physiology and Biochemistry, vol. 95, pp. 92–102, 2015.
X. Liu., X. Li., C. Dai., J. Zhou., T.Yan., J. Zhang. “Improved short-term drought response of transgenic rice over-expressing maize C4 phosphoenolpyruvate carboxylase via calcium signal cascade.” Journal of Plant Physiology, vol. 218, pp. 206–221, 2017.
H.M. Kalaji., G. Schansker., M. Brestic., F. Bussotti., A. Calatayud., L. Ferroni., et al. “Frequently asked questions about chlorophyll fluorescence, the sequel.” Photosynthesis Research, vol. 132, pp. 13-66, 2017.
M. Rossini., L. Nedbal., L. Guanter., A. Ač., L. Alonso., A. Burkart, et al. “Red and far red Sun-induced chlorophyll fluorescence as a measure of plant photosynthesis.” Geophysical Research Letters, vol. 42, pp. 1632–1639, 2015.
H. Du., M. Qi., X. Cui., Y. Cui., H. Yang, J. Zhang, et al. “Proteomic and functional analysis of soybean chlorophyll-deficient mutant cd1 and the underlying gene encoding the CHLI subunit of Mg-chelatase.” Molecular Breeding, vol. 38, pp. 1–14, 2018.
R. Xiang., J. Shi., H. Zhang., C. Dong., L. Liu., J. Fu., et al. “Chlorophyll a fluorescence and transcriptome reveal the toxicological effects of bisphenol A on an invasive cyanobacterium, Cylindrospermopsis raciborskii.” Aquatic Toxicology, vol. 200, pp. 188–196, 2018.
X. Liu., M. Li., L. Su., S. Lian., B. Zhang. et al. “AhGLK1 affects chlorophyll biosynthesis and photosynthesis in peanut leaves during recovery from drought.” Scientific Reports, vol. 8, pp. 1–11, 2018.
X. Liu., Z. Wang., L. Wang., R. Wu., J. Phillips., X. Deng. “LEA 4 group genes from the resurrection plant Boea hygrometrica confer dehydration tolerance in transgenic tobacco.” Plant Science, vol. 176, pp. 90–98, 2009.
Y.H. Zhang., E.M. Wang., T.F. Zhao., Q.Q. Wang., L.J. Chen. “Characteristics of chlorophyll fluorescence and antioxidant-oxidant balance in PEPC and PPDK transgenic rice under aluminum stress. russ.” Journal of Plant Physiology, vol. 65, pp. 49–56, 2018.
J. Wu., J. Ji., G. Wang., G. Wu., J. Diao., Z. Li., et al. “Ectopic expression of the Lycium barbarum b-carotene hydroxylase gene (chyb) enhances drought and salt stress resistance by increasing xanthophyll cycle pool in tobacco.” Plant Cell, Tissue and Organ Culture, vol. 121, pp. 559–569, 2015.
A. Eckstein., P. Zieba., H. Gabrys. “Sugar and light effects on the condition of the photosynthetic apparatus of Arabidopsis thaliana cultured in vitro.” Journal of Plant Growth Regulation, vol. 31, pp. 90–101, 2012.
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