Application of DNA Barcoding to Authentic Panax Vietnamensis

Authors

  • Nguyen T. P. Trang Institute of Ecology and Biological Resources, Vietnam academy of Science and Technology, 18 Hoang Quoc Viet road, Ha Noi city, Vietnam
  • Nguyen T. H. Mai Institute of Biology and Soil Science, Far Eastern Branch Russian Academy of Sciences
  • Yuri N. Zhuravlev

Keywords:

Panax vietnamensis, ginseng, DNA barcoding, Panax vietnamensis var fuscidiscus.

Abstract

Panax L. genus consists of 11 species and sub- species. It distribute in North America and in eastern Asia (mostly northeast China, Korea, Bhutan, eastern Siberia), typically in cooler climates. In Vietnam, up to now, currently five species of the genus Panax and one sub-species have been identified including Panax bipinnatifidus Seem., P. stipuleanatus Feng Tsai et, P. vietnamensis Ha et Grushv., P. pseudoginseng Wall., P. ginseng Meyer. and Panax vietnamensis var. fuscidiscus. Panax vietnamensis is endemic species in Vietnam that only distribute around Ngoc Linh mountain with the altitude from 1500m to 2400m, in limited geograpgical coordinates from 14055to 15007north latitude and from 107051to 108005 east longitude. This species is unique Panax species that distributes to 150 north latitude and it is considered as the most valuable medicinal plants in Vietnam. But Panax vietnamensis and Panax vietnamensis var. fuscidiscus share many similar characteristics and make people often confused. In this research, we used of DNA barcoding to authentic Panax vietnamensis. We sequenced 4 chloroplast DNA regions includes MatK, rbcL, rpoB and 1 nuclear DNA regions ITS for comparison and choose the best one for identification of the Panax species. Our result showed that ITS-rDNA is the best marker for authentic Panax species. MatK is good for identify at species level but rpoB good for identify at subspecies level. The sequence of MatK, rbcL, rpoB, rpoC, ITS of Panax vietnamensis and Panax vietnamensis var. fuscidiscus were submitted to Genebank with accessory number as KJ 418201, KJ 418206, KT 154685, KT 194325, KT154583, KT 194326, KJ 418194, KJ 418193 respectively.

References

[1]. CBOL Plant Working Group, (2009). “A DNA barcode for land plants”. Proc. Natl. Acad. Sci. U. S. A. vol.106, pp: 12794-12797.
[2]. Chen S., Yao H., Han J., Liu C., Song J., Shi L., Zhu Y., Ma X., gao T., Pang X., (2010). « Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plants species”. PloS One, vol 5, pp: 8613.
[3]. Conrad L. Schoch, Keith A. Seifert, Sabine Huhndorf, Vincent Robert, John L. Spouge, C. André Levesque, Wen Chen, and Fungal Barcoding Consortium, (2012). “Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi”, Proc. Natl. Acad. Sci. U. S. A. vol 109, No. 16, pp. 6241-6246
[4]. Doyle, J.J., Doyle, J.L., (1987). “A rapid DNA isolation procedure from small quantities of fresh leaf tissue”. Phytochemistry Bulletin vol. 19; pp. 11-15.
[5]. Ha, T. D. and Grushvitzky, I.V.,(1985). “New species in Panax (Araliaceae) in Vi?t Nam”, J. Botany, vol.70, pp. 518 – 522.
[6]. Hasebe M, Omori T, Nakazawa M, Sano T, et al. (1994). “rbcL gene sequences provide evidence for the evolutionary lineages of leptosporangiate ferns”. Proc. Natl. Acad. Sci. U. S. A. vol. 91, pp. 5730-5734.
[7]. IUCN (2015), “The IUCN Red List of Threatened species”, IUCN.SSC. Available: WWW.Redlist.org
[8]. Ministry of Science and Technology, Vietnam, (2007). “Vietnam Red list”.
[9]. Nguyen Thi Phuong Trang, Nguyen Giang Son, Le Thanh Son, Phan Ke Long, (2011). “Genetic relationship between Panax vietnamensis with other species in Panax genus”. Proceed of 4th International meeting of Ecology and Biological resources, pp: 955-959.
[10]. Phan Ke Long, Le Thanh Son, Phan Ke Loc, Vu Dinh Duy, Pham Van The, (2013). “Lai Chau ginseng Panax vietnamensis var. fuscidicus K. Komatsu, S. Zhu & S.Q.Cai.I. morphology, ecology, distribution and conservation status”. Proceedings of the 2nd VAST-KAST workshop on Biodiversity and Bio-active compounds.
[11]. Shaw J, Lickey EB, Beck JT, Farmer SB, et al. (2005). “The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis”. Am. J. Bot. vol. 92: pp. 142-166.
[12]. Tran Le Quan, Adnyana I.K., Tezuka Y., Harimaya Y., Saiki I., Kurashige Y., Tran Kim Quy, Kadota S., (2002). “Hepatoprotective effect of majonoside R2, the major saponin from Vietnamese ginseng (Panax vietnamensis)”. Planta medica, vol.68, pp. 402-406.
[13]. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S., (2013). MEGA 6: “Molecular evolutionary genetics analysis version 6.0”, Mol Biol Evol. Vol. 30 (12), pp. 2725-2729.
[14]. Wu, Z. Y., P. H. Raven & D. Y. Hong, (2011), “Flora of China”, Missouri Botanical Garden Press, St. Louis. Vol. 19, pp. 714-800.

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Published

2017-03-18

How to Cite

T. P. Trang, N., T. H. Mai, N., & N. Zhuravlev, Y. (2017). Application of DNA Barcoding to Authentic Panax Vietnamensis. American Scientific Research Journal for Engineering, Technology, and Sciences, 29(1), 60–67. Retrieved from https://asrjetsjournal.org/index.php/American_Scientific_Journal/article/view/2744

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